Source code for laborchestrator.start_up.example_processes.inc_read_process

from pythonlab.resources.services.moving import MoverServiceResource
from pythonlab.resources.services.analysis import PlateReaderServiceResource
from pythonlab.resources.services.labware_storage import LabwareStorageResource as ContainerStorageResource
from pythonlab.resources.services.incubation import IncubatorServiceResource
from pythonlab.resource import LabwareResource as ContainerResource
from pythonlab.process import PLProcess




class IncReadProcess(PLProcess):
    def __init__(self,
                 priority=10):  # 0 has highest priority

        self.num_mw_plates = 2  # different number

        super().__init__(priority=priority)



    def create_resources(self):
        self.hotel = ContainerStorageResource(proc=self, name="Carousel", capacity=200)
        self.incubator = IncubatorServiceResource(proc=self, name="Incubator1")
        self.robot_arm = MoverServiceResource(proc=self, name="Mover")
        self.reader = PlateReaderServiceResource(proc=self, name="Plate_Reader")

        self.containers = [ContainerResource(proc=self, name=f"expression_cont_{cont}", lidded=True, filled=True)
                           for cont in range(self.num_mw_plates)]
        self.containers[0].priority = 2




    def init_service_resources(self):
        # setting start position of containers
        super().init_service_resources()
        for cont in self.containers:
            cont.set_start_position(
                self.hotel, self.hotel.next_free_position+14)




    def process(self):
        incubation_duration = 120

        cont1 = self.containers[0]
        for cont in self.containers:
            self.robot_arm.read_barcode(cont)
            # move to incubator
            self.robot_arm.move(cont, target_loc=self.incubator)
            # incubate
            self.incubator.incubate(cont, duration=incubation_duration, temperature=310)
            if cont == cont1:
                # move to reader
                self.robot_arm.move(cont, target_loc=self.reader, lidded=False)
                # make absorbance measurement
                self.reader.single_read(cont, method='211001_varioskan_single_well_600', duration=60)
        # move back to hotel
        for cont in self.containers:
            if cont == cont1:
                self.robot_arm.move(cont, target_loc=self.hotel, lidded=True)
            else:
                self.robot_arm.move(cont, target_loc=self.hotel, position=30, lidded=True)

        print("FIN")